PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085491.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 343aa    MW: 37171.4 Da    PI: 9.0368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.6e-122549327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C ++++tGtCkyG++Ck++H++
  XP_011085491.1 25 QPDCGYYLKTGTCKYGSTCKYHHPK 49
                    789********************96 PP

2zf-CCCH33.85.6e-116892327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    t+ C++++rtG CkyG  CkF+H++
  XP_011085491.1 68 TRSCPYYMRTGLCKYGYACKFHHPQ 92
                    899********************97 PP

3zf-CCCH352.4e-11194219227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+  G CkyG  Ck++H++
  XP_011085491.1 194 DQPECRYFMIHGSCKYGLDCKYHHPK 219
                     689*********************96 PP

4zf-CCCH35.81.3e-11239264126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++ +G CkyG++CkF H+
  XP_011085491.1 239 PGQPICSYYSLYGLCKYGPTCKFDHP 264
                     5789*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-52249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.682250IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-92549IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-62750IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-42849IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-76393IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-56592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2496593IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-86792IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-56891IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497192220IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9194219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6195222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4198220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6237264IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699238266IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8240264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4243263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVQCPIKLKV YGVKNTSELP ERAGQPDCGY YLKTGTCKYG STCKYHHPKD RQADVLMNLV  60
GLPMRQNTRS CPYYMRTGLC KYGYACKFHH PQPATTTNVL PVIGPVYGSG GSTGAPSPGA  120
PSIGDPSTTP LSKATYFSNS LLQLPQNYIP LFLSPSQGWN TYMGSVAPLS VTSVLTTPAS  180
NGQLSASYLP ERPDQPECRY FMIHGSCKYG LDCKYHHPKE KISQVASSSL GPLGLPLRPG  240
QPICSYYSLY GLCKYGPTCK FDHPLDGYSY AYSLAVPPLA AAYSSTTPYQ RATPLVPLSE  300
TSLAKPSRVS DCIKKGETTG NKNQQPKTKN VGDSPNPSDS LPH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085491.10.0PREDICTED: zinc finger CCCH domain-containing protein 33 isoform X4
SwissprotQ94AD92e-72C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A022RSU51e-134A0A022RSU5_ERYGU; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-65C3H family protein